| Line 18: |
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| align="left" style="background:#f0f0f0;"|'''Raw Data''' |
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| align="left" style="background:#f0f0f0;"|'''Raw Data''' |
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|- |
|
|- |
| - |
| # contigs||[[Media:spd_d2_web.fasta | 11]]||[[Media:spd_d2_raw.fasta | 13]]
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+ |
| # contigs||[[Media:spd_d2_web.fasta | 57]]||[[Media:spd_d2_raw.fasta | 44]]
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|- |
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|- |
| - |
| Largest contig||3188818||3188540
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+ |
| Largest contig||1209840||1895290
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|- |
|
|- |
| - |
| Total length||4601792||4588701
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+ |
| Total length||4566203||4584163
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|- |
|
|- |
| - |
| N50||3188818||3188540
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+ |
| N50||318530||422736
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|- |
|
|- |
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| align="left" style="background:#f0f0f0;"|[[Media: spades_D2.pdf | '''Misassemblies''']] |
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| align="left" style="background:#f0f0f0;"|[[Media: spades_D2.pdf | '''Misassemblies''']] |
| Line 30: |
| - |
| # misassemblies||16||12
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+ |
| # misassemblies||33||10
|
| |
|- |
|
|- |
| - |
|Misassembled contigs length ||4370092||4361060
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+ |
|Misassembled contigs length ||3312932||1235058
|
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|- |
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| align="left" style="background:#f0f0f0;"|'''Mismatches''' |
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| align="left" style="background:#f0f0f0;"|'''Mismatches''' |
| Line 36: |
| - |
|# mismatches per 100kbp ||3.48||3.77
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+ |
|# mismatches per 100kbp ||53.46||37.73
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| |
|- |
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|- |
| - |
|# indels per 100kbp ||3.52||5.13|
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+ |
|# indels per 100kbp ||23.18||8.02
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| |
|- |
|
|- |
| - |
|# N's per 100kbp ||0||0.09
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+ |
|# N's per 100kbp ||203.41||79.88
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|- |
|
|- |
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| align="left" style="background:#f0f0f0;"|'''Genome statistics''' |
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| align="left" style="background:#f0f0f0;"|'''Genome statistics''' |
| Line 44: |
| - |
| Genome fraction (%)||99.932||99.683|
|
+ |
| Genome fraction (%)||98.589||99.157
|
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|- |
|
|- |
| - |
| Duplication ratio ||1.011||1.005
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+ |
| Duplication ratio ||1.006||1.005
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|- |
|
|- |
| - |
| # genes||4381 + 6 part　||4369 + 10 part
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+ |
| # genes||4170 + 166 part　||4287 + 68 part
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|- |
|
|- |
| - |
| NGA50 || 904505 || 2938269
|
+ |
| NGA50 || 164917||331154
|
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|- |
|
|- |
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| align="left" style="background:#f0f0f0;"|''' Running Time '''|| 2hr12m ||5hr 09m |
|
| align="left" style="background:#f0f0f0;"|''' Running Time '''|| 2hr12m ||5hr 09m |
