Version Differences for SPAdes - D2

(→Evaluation)
(→Evaluation)
Line 69:
  | # contigs||[[Media:spd_d2_web_nopac.fasta | 114]]||[[Media:spd_d2_raw_nopac.fasta | 93]]    | # contigs||[[Media:spd_d2_web_nopac.fasta | 114]]||[[Media:spd_d2_raw_nopac.fasta | 93]] 
  |-    |- 
- | Largest contig||3188995||3186675   + | Largest contig||902414||1213129  
  |-    |- 
- | Total length||4592561||4583750   + | Total length||4572450||4572029  
  |-    |- 
- | N50||3188995||3186675   + | N50||183697||223105  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|[[Media: spades_D2_nopac,pdf | '''Misassemblies''']]    | align="left" style="background:#f0f0f0;"|[[Media: spades_D2_nopac,pdf | '''Misassemblies''']] 
Line 79:
- | # misassemblies||9||6   + | # misassemblies||27||6  
  |-    |- 
- |Misassembled contigs length ||4205887||4147900   + |Misassembled contigs length ||2751349||719244  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Mismatches'''    | align="left" style="background:#f0f0f0;"|'''Mismatches''' 
Line 85:
- |# mismatches per 100kbp ||5.81||4.233   + |# mismatches per 100kbp ||54.6||33.53  
  |-    |- 
- |# indels per 100kbp ||5.64||3.57   + |# indels per 100kbp ||9.48||5.25  
  |-    |- 
- |# N's per 100kbp ||120.74||149.31   + |# N's per 100kbp ||508.06||141.6  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|'''Genome statistics'''    | align="left" style="background:#f0f0f0;"|'''Genome statistics''' 
Line 93:
- | Genome fraction (%)||99.45||98.789   + | Genome fraction (%)||98.555||98.821  
  |-    |- 
- | Duplication ratio ||1.018||1.022   + | Duplication ratio ||1.009||1.006  
  |-    |- 
- | # genes||4348 + 27 part　||4313 + 47 part   + | # genes||4063 + 285 part　||4208 + 144 part  
  |-    |- 
- | NGA50 ||3182258||3180491   + | NGA50 ||148794||217190  
  |-    |- 
  | align="left" style="background:#f0f0f0;"|''' Running Time '''||1hr 19m ||1d 15hr 44m    | align="left" style="background:#f0f0f0;"|''' Running Time '''||1hr 19m ||1d 15hr 44m