| Line 18: |
| |
| align="left" style="background:#f0f0f0;"|'''Raw Data''' |
|
| align="left" style="background:#f0f0f0;"|'''Raw Data''' |
| |
|- |
|
|- |
| - |
| # contigs||[[Media:alg_d3_web.fasta | 1]]||[[Media:alg_d3_raw.fasta | 5]]
|
+ |
| # contigs||[[Media:alg_d3_web.fasta | 20]]||[[Media:alg_d3_raw.fasta | 90]]
|
| |
|- |
|
|- |
| - |
| Largest contig||2162245||1340620
|
+ |
| Largest contig||433183||423414
|
| |
|- |
|
|- |
| - |
| Total length||2162245||2140045
|
+ |
| Total length||2157030||2239813
|
| |
|- |
|
|- |
| - |
| N50||2162245||1340620
|
+ |
| N50||210016||365564
|
| |
|- |
|
|- |
| |
| align="left" style="background:#f0f0f0;"|[[Media:spades_D3.pdf | '''Misassemblies''']] |
|
| align="left" style="background:#f0f0f0;"|[[Media:spades_D3.pdf | '''Misassemblies''']] |
| Line 30: |
| - |
| # misassemblies||4||1
|
+ |
| # misassemblies||13||8
|
| |
|- |
|
|- |
| - |
|Misassembled contigs length ||2162245||1340620
|
+ |
|Misassembled contigs length ||1358992||815978
|
| |
|- |
|
|- |
| |
| align="left" style="background:#f0f0f0;"|'''Mismatches''' |
|
| align="left" style="background:#f0f0f0;"|'''Mismatches''' |
| Line 36: |
| - |
|# mismatches per 100kbp ||5.7||2.15
|
+ |
|# mismatches per 100kbp ||26.66||31.5
|
| |
|- |
|
|- |
| - |
|# indels per 100kbp ||3.52||1.08
|
+ |
|# indels per 100kbp ||4.52||2.89
|
| |
|- |
|
|- |
| - |
|# N's per 100kbp ||0.05||0.14
|
+ |
|# N's per 100kbp ||727.2||414.9
|
| |
|- |
|
|- |
| |
| align="left" style="background:#f0f0f0;"|'''Genome statistics''' |
|
| align="left" style="background:#f0f0f0;"|'''Genome statistics''' |
| Line 44: |
| - |
| Genome fraction (%)||99.946||99.967
|
+ |
| Genome fraction (%)||98.267||99.177
|
| |
|- |
|
|- |
| - |
| Duplication ratio ||1.011||1.005
|
+ |
| Duplication ratio ||1.017||1.018
|
| |
|- |
|
|- |
| - |
| # genes||2297 + 4 part　||2299 + 2 part
|
+ |
| # genes||2244 + 25 part　||2269 + 21 part
|
| |
|- |
|
|- |
| |
| NGA50 ||1198037||1338442 |
|
| NGA50 ||1198037||1338442 |
| Line 63: |
| |
| align="left" style="background:#f0f0f0;"|'''Raw Data''' |
|
| align="left" style="background:#f0f0f0;"|'''Raw Data''' |
| |
|- |
|
|- |
| - |
| # contigs||[[Media:alg_d3_web_nopac.fasta | 4]]||[[Media:alg_d3_raw_nopac.fasta | 6]]
|
+ |
| # contigs||[[Media:alg_d3_web_nopac.fasta | 65]]||[[Media:alg_d3_raw_nopac.fasta | 142]]
|
| |
|- |
|
|- |
| - |
| Largest contig||1663585||2135901
|
+ |
| Largest contig||247182||362472
|
| |
|- |
|
|- |
| - |
| Total length||2161502||2144412
|
+ |
| Total length||2176172||2192447
|
| |
|- |
|
|- |
| - |
| N50||1663585||2135901
|
+ |
| N50||84287||81903
|
| |
|- |
|
|- |
| |
| align="left" style="background:#f0f0f0;"|[[Media:spdes_D3_nopac.pdf | '''Misassemblies''']] |
|
| align="left" style="background:#f0f0f0;"|[[Media:spdes_D3_nopac.pdf | '''Misassemblies''']] |
| Line 75: |
| - |
| # misassemblies||5||19
|
+ |
| # misassemblies||19||3
|
| |
|- |
|
|- |
| - |
|Misassembled contigs length ||1663585||2138844
|
+ |
|Misassembled contigs length ||1114155||85063
|
| |
|- |
|
|- |
| |
| align="left" style="background:#f0f0f0;"|'''Mismatches''' |
|
| align="left" style="background:#f0f0f0;"|'''Mismatches''' |
| Line 81: |
| - |
|# mismatches per 100kbp ||2.62||4.9
|
+ |
|# mismatches per 100kbp ||20.9|18.33
|
| |
|- |
|
|- |
| - |
|# indels per 100kbp ||1.5||17.33
|
+ |
|# indels per 100kbp ||2.14||2.1
|
| |
|- |
|
|- |
| - |
|# N's per 100kbp ||759.8||1714.74
|
+ |
|# N's per 100kbp ||1305|
|
| |
|- |
|
|- |
| |
| align="left" style="background:#f0f0f0;"|'''Genome statistics''' |
|
| align="left" style="background:#f0f0f0;"|'''Genome statistics''' |
