Version Differences for SPAdes - D5

Line 1:
    + * '''Evaluated by QUAST'''  
    + : [http://bioinf.spbau.ru/en/quast/ QUAST] (QUAST v2.3)  
    + : Running QUAST requires [[Media: Ec_gene_result.ncbi | Ec_gene_list]] and [ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655_uid57779/ NC_000913.fna]. There are 4497 genes in total.  
    + *'''Score with QUAST: With PacBio Long Reads''' [ more detail]  
       
    + {| {{table}} border="１"  
    + | align="left" style="background:#f0f0f0;"|'''Basic statistics'''  
    + | align="left" style="background:#f0f0f0;"|'''Website data '''  
    + |-  
    + | # contigs||[[Media:spd_d5_raw_single.fasta | 1]]  
    + |-  
    + | Largest contig||4638970  
    + |-  
    + | Total length||4638970  
    + |-  
    + | N50||4638970||4625005  
    + |-  
    + | align="left" style="background:#f0f0f0;"|[[Media: spades_d1.pdf | '''Misassemblies''']]  
    + |-  
    + | # misassemblies||1  
    + |-  
    + |Misassembled contigs length ||4638970  
    + |-  
    + | align="left" style="background:#f0f0f0;"|'''Mismatches'''  
    + |-  
    + |# mismatches per 100kbp ||0.11  
    + |-  
    + |# indels per 100kbp ||0.09  
    + |-  
    + |# N's per 100kbp ||0  
    + |-  
    + | align="left" style="background:#f0f0f0;"|'''Genome statistics'''  
    + |-  
    + | Genome fraction (%)||99.983  
    + |-  
    + | Duplication ratio ||1  
    + |-  
    + | # genes||4494 + 1 part  
    + |-  
    + | NGA50 || 4638970  
    + |-  
    + | align="left" style="background:#f0f0f0;"|''' Running Time '''|| 42m  
    + |-  
    + |}  
       
    + [[Media: spades_d5_summary.pdf | '''Misassemblies''']] for Adobe reader.