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[[Media: spades_hb_summary.pdf | '''Misassemblies''']] for Adobe reader. |
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[[Media: spades_hb_summary.pdf | '''Misassemblies''']] for Adobe reader. |
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We have evaluated the assemblies with [http://bioinf.spbau.ru/en/quast QUAST 2.3](reference genome [ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655_uid57779/ NC_000913] and [[Media: Ec_gene_result.ncbi | Ec_gene_list]]). [http://sb.nhri.org.tw/comps/quast/SPAdes/hybrid/report.html more detail]
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{| {{table}} border="1"
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| align="center" style="background:#f0f0f0;"|'''Statistics without reference'''
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| align="center" style="background:#f0f0f0;"|'''Miseq_only'''
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| align="center" style="background:#f0f0f0;"|'''Miseq_1cell'''
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| align="center" style="background:#f0f0f0;"|'''Miseq_2cell'''
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| align="center" style="background:#f0f0f0;"|'''Miseq_3cell'''
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| align="center" style="background:#f0f0f0;"|'''Miseq_4cell'''
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| align="center" style="background:#f0f0f0;"|'''Miseq_17cell'''
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| align="center" style="background:#f0f0f0;"|'''Miseq_d9'''
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|-
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| # contigs||[[Media:spd_miseq.fasta|86]]||[[Media:spd_hb_1cell.fasta|15]]||[[Media:spd_hb_2cell.fasta|14]]||[[Media:spd_hb_3cell.fasta|12]]||[[Media:spd_hb_4cell.fasta|11]]||[[Media:spd_hb_17cell.fasta|6]]||[[Media:spd_hb_p4c2.fasta|6]]
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|-
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| Largest contig||285889||2498709||3196491||1522255||2216997||4644452||4644455
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|-
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| Total length||4577132||4626443||4639784||4651072||4649795||4652420||4652423
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|-
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| N50||139882||2498709||3196491||1241619||1750947||4644452||4644455
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|-
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| style="background:#f0f0f0;"|[[Media: spade_hybrid.pdf| '''Misassemblies''']]||||||||||||||
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|-
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| # misassemblies||2||6||6||7||7||7||7
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|-
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| Misassembled contigs length||215581||2498709||3196491||2501706||3967944||4644452||4644455
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|-
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| style="background:#f0f0f0;"| Mismatches||||||||||||||
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|-
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| # mismatches per 100 kbp||3.02||5.16||6.16||6.79||6.81||6.79||6.79
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|-
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| # indels per 100 kbp||0.46||0.54||0.54||0.58||0.58||0.67||0.58
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|-
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| # N's per 100 kbp||0||0||0||0||0||0||0
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|-
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| style="background:#f0f0f0;"| Genome statistics||||||||||||||
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|-
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| Genome fraction (%)||98.451||99.411||99.756||100||99.976||100||100
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|-
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| Duplication ratio||1.001||1.001||1.001||1.001||1.001||1.001||1.001
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|-
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| # genes||4399 + 32 part||4479 + 3 part||4485 + 4 part||4492 + 5 part||4492 + 5 part||4495 + 2 part||4495 + 2 part
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|-
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| NGA50||133059||692561||1041186||889325||1278976||3026419||3026422
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|-
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| align="left" style="background:#f0f0f0;"|''' Running Time '''||2hr 28m||2hr 34m ||2hr 36m|| 2hr 40m||2hr 35m||2hr 46m||2hr 33m
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|}
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[[Media: spades_hb_summary.pdf | '''Misassemblies''']] for Adobe reader.
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