Version Differences for SPAdes - hybrid
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(→Evaluation)
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(→Evaluation)
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| [[Media: spades_hb_summary.pdf | '''Misassemblies''']] for Adobe reader. | [[Media: spades_hb_summary.pdf | '''Misassemblies''']] for Adobe reader. | ||
| + | Randomly selected 76X coverage subreads | ||
| We have evaluated the assemblies with [http://bioinf.spbau.ru/en/quast QUAST 2.3](reference genome [ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655_uid57779/ NC_000913] and [[Media: Ec_gene_result.ncbi | Ec_gene_list]]). [http://sb.nhri.org.tw/comps/quast/SPAdes/hybrid/report.html more detail] | We have evaluated the assemblies with [http://bioinf.spbau.ru/en/quast QUAST 2.3](reference genome [ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655_uid57779/ NC_000913] and [[Media: Ec_gene_result.ncbi | Ec_gene_list]]). [http://sb.nhri.org.tw/comps/quast/SPAdes/hybrid/report.html more detail] | ||
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| | align="center" style="background:#f0f0f0;"|'''Miseq_d9''' | | align="center" style="background:#f0f0f0;"|'''Miseq_d9''' | ||
| |- | |- | ||
| - | | # contigs||[[Media:spd_miseq.fasta|86]]||[[Media:spd_hb_1cell.fasta|23]]||[[Media:spd_hb_2cell.fasta|18]]||[[Media:spd_hb_3cell.fasta|19]]||[[Media:spd_hb_4cell.fasta|15]]||[[Media:spd_hb_17cell.fasta|15]]||[[Media:spd_hb_p4c2.fasta|15]] | + | | # contigs||[[Media:spd_miseq.fasta|86]]||[[Media:spd_hb_1cell_76X.fasta|23]]||[[Media:spd_hb_2cell_76X.fasta|18]]||[[Media:spd_hb_3cell_76X.fasta|19]]||[[Media:spd_hb_4cell_76X.fasta|15]]||[[Media:spd_hb_17cell_76X.fasta|15]]||[[Media:spd_hb_p4c2_76X.fasta|15]] |
| |- | |- | ||
| | Largest contig||285889||2498544||3195523||2501177||3893601||3893600||3893600 | | Largest contig||285889||2498544||3195523||2501177||3893601||3893600||3893600 | ||