Line 20: |
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| align="center" style="background:#f0f0f0;"|'''Miseq_d9''' |
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| align="center" style="background:#f0f0f0;"|'''Miseq_d9''' |
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|- |
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|- |
- |
| # contigs||80||93||83||61||69||68||66
|
+ |
| # contigs||86||15||18||16||15||17||14
|
|
|- |
|
|- |
- |
| Largest contig||745120||664876||562203||663399||434084||345313||437164
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+ |
| Largest contig||285889||2497845||1260980||2501081||3194637||1954649||3392211
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|- |
|
|- |
- |
| Total length||4975695||5031560||5043217||4804004||4805579||4801310||4733683
|
+ |
| Total length||4577132||4632009||4633058||4636174||4638657||4633857||4632677
|
|
|- |
|
|- |
- |
| N50||356974||221472||324225||295449||179662||207976||186993
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+ |
| N50||139882||2497845||1238868||2501081||3194637||1238635||3392211
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|- |
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|- |
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| style="background:#f0f0f0;"| Misassemblies|||||||||||||| |
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| style="background:#f0f0f0;"| Misassemblies|||||||||||||| |
Line 32: |
- |
| # misassemblies||11||17||21||10||13||20||15
|
+ |
| # misassemblies||2||9||10||10||10||8||8
|
|
|- |
|
|- |
- |
| Misassembled contigs length||1552524||976207||2108892||1222277||782726||1156917||527873
|
+ |
| Misassembled contigs length||215581||3193893||3244631||2705788||3657574||3243566||4050696
|
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|- |
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|- |
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| style="background:#f0f0f0;"| Mismatches|||||||||||||| |
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| style="background:#f0f0f0;"| Mismatches|||||||||||||| |
Line 38: |
- |
| # mismatches per 100 kbp||3.32||2.91||3.06||7.08||6.4||10.33||4.13
|
+ |
| # mismatches per 100 kbp||3.02||7.15||6.2||6.9||7.17||6.05||6.43
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|
|- |
|
|- |
- |
| # indels per 100 kbp||2.98||1.38||1.01||13.15||5.2||5.54||2.69
|
+ |
| # indels per 100 kbp||0.46||1.06||1||1.32||1.27||0.95||1.06
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|
|- |
|
|- |
- |
| # N's per 100 kbp||0.38||0.12||0.22||0.4||0.37||0.4||0.23
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+ |
| # N's per 100 kbp||0||97.89||67.67||77.33||77.37||91.03||123.88
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|- |
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|- |
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| style="background:#f0f0f0;"| Genome statistics|||||||||||||| |
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| style="background:#f0f0f0;"| Genome statistics|||||||||||||| |
Line 46: |
- |
| Genome fraction (%)||99.97||100||100||99.304||99.424||99.522||98.712
|
+ |
| Genome fraction (%)||98.451||99.498||99.483||99.664||99.748||99.432||99.587
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|- |
|
|- |
- |
| Duplication ratio||1.074||1.086||1.090||1.043||1.047||1.04||1.033
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+ |
| Duplication ratio||1.001||1.002||1.002||1.002||1.002||1.003||1.001
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|- |
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|- |
- |
| # genes||4489 + 7 part||4490 + 7 part||4495 + 2 part||4461 + 25 part||4451 + 31 part||4459 + 28 part||4412 + 32 part
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+ |
| # genes||4399 + 32 part||4467 + 14 part||4465 + 13 part||4476 + 11 part||4477 + 11 part||4467 + 11 part||4470 + 13 part
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|- |
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|- |
- |
| NGA50||357183||221098||279423||226118||179662||194634||191457
|
+ |
| NGA50||133059||571664||425173||852639||1039467||1039472||1039654
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|- |
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|- |
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|} |
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|} |