| Line 53: |
| |
|- |
|
|- |
| |
|} |
|
|} |
| |
|
|
|
| - |
We discarded the contigs which fewer than 100 reads aligned. [http://sb.nhri.org.tw/comps/quast/ReadDepths/1_SMRT/report.html more detail]
|
|
|
| |
|
|
|
| - |
{| {{table}} border="1"
|
|
|
| - |
| align="center" style="background:#f0f0f0;"|'''Statistics without reference'''
|
|
|
| - |
| align="center" style="background:#f0f0f0;"|'''071634_raw_asm.ctg'''
|
|
|
| - |
| align="center" style="background:#f0f0f0;"|'''192221_raw_asm.ctg'''
|
|
|
| - |
| align="center" style="background:#f0f0f0;"|'''210845_raw_asm.ctg'''
|
|
|
| - |
| align="center" style="background:#f0f0f0;"|'''071634_100X_asm.ctg'''
|
|
|
| - |
| align="center" style="background:#f0f0f0;"|'''071634_118X_asm.ctg'''
|
|
|
| - |
| align="center" style="background:#f0f0f0;"|'''192221_118X_asm.ctg'''
|
|
|
| - |
| align="center" style="background:#f0f0f0;"|'''210845_118X_asm.ctg'''
|
|
|
| - |
|-
|
|
|
| - |
| # contigs||[[Media:071634_raw_asm.ctg.fa|19]]||[[Media:192221_raw_asm.ctg.fa|24]]||[[Media:210845_raw_asm.ctg.fa|21]]||[[Media:071634_100X_asm.ctg.fa|28]]||[[Media:071634_118X_asm.ctg.fa|38]]||[[Media:192221_118X_asm.ctg.fa|29]]||[[Media:210845_118X_asm.ctg.fa|31]]
|
|
|
| - |
|-
|
|
|
| - |
| Largest contig||745120||664876||592203||663399||434084||345313||437164
|
|
|
| - |
|-
|
|
|
| - |
| Total length||4669108||4675696||4700617||4636263||4644391||4603072||4578972
|
|
|
| - |
|-
|
|
|
| - |
| N50||356974||222559||399011||295449||180706||207976||191458
|
|
|
| - |
|-
|
|
|
| - |
| style="background:#f0f0f0;"| Misassemblies||||||||||||||
|
|
|
| - |
|-
|
|
|
| - |
| # misassemblies||7||6||11||6||5||7||6
|
|
|
| - |
|-
|
|
|
| - |
| Misassembled contigs length||1539749||936587||2058922||1200212||727024||1097466||478971
|
|
|
| - |
|-
|
|
|
| - |
| style="background:#f0f0f0;"| Mismatches||||||||||||||
|
|
|
| - |
|-
|
|
|
| - |
| # mismatches per 100 kbp||2.75||2.75||3.04||7.08||5.85||8.82||3.69
|
|
|
| - |
|-
|
|
|
| - |
| # indels per 100 kbp||2.23||1.1||1.17||13.46||5.83||2.49||2.37
|
|
|
| - |
|-
|
|
|
| - |
| # N's per 100 kbp||0.19||0.02||0.04||0.26||0.15||0.07||0.02
|
|
|
| - |
|-
|
|
|
| - |
| style="background:#f0f0f0;"| Genome statistics||||||||||||||
|
|
|
| - |
|-
|
|
|
| - |
| Genome fraction (%)||99.639||99.699||99.834||99.984||99.051||98.78||98.159
|
|
|
| - |
|-
|
|
|
| - |
| Duplication ratio||1.011||1.011||1.017||1.01||1.015||1.005||1.006
|
|
|
| - |
|-
|
|
|
| - |
| # genes||4473 + 15 part||4465 + 18 part||4480 + 10 part||4435 + 29 part||4431 + 36 part||4413 + 36 part||4380 + 34 part
|
|
|
| - |
|-
|
|
|
| - |
| NGA50||357183||221098||279423||226118||179662||194634||191457
|
|
|
| - |
|-
|
|
|
| - |
|}
|
|
|
