Version Differences for SSPACE
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(→Evaluation)
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(→Evaluation)
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| |} | |} | ||
| [[Media: sspace_summary.pdf | '''Misassemblies''']] for Adobe reader. | [[Media: sspace_summary.pdf | '''Misassemblies''']] for Adobe reader. | ||
| + | {| {{table}} border="1" | ||
| + | | align="center" style="background:#f0f0f0;"|'''Statistics without reference''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''Miseq_only''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''Miseq_1cell''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''Miseq_2cell''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''Miseq_3cell''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''Miseq_4cell''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''Miseq_17cell''' | ||
| + | | align="center" style="background:#f0f0f0;"|'''Miseq_d9''' | ||
| + | |- | ||
| + | | # contigs||[[Media:spd_miseq.fasta|86]]||[[Media:spd_sspace_1cell.fasta|15]]||[[Media:spd_sspace_2cell.fasta|18]]||[[Media:spd_sspace_3cell.fasta|16]]||[[Media:spd_sspace_4cell.fasta|15]]||[[Media:spd_sspace_17cell.fasta|17]]||[[Media:spd_sspace_p4c2.fasta|14]] | ||
| + | |- | ||
| + | | Largest contig||285889||2497845||1260980||2501081||3194637||1954649||3392211 | ||
| + | |- | ||
| + | | Total length||4577132||4632009||4633058||4636174||4638657||4633857||4632677 | ||
| + | |- | ||
| + | | N50||139882||2497845||1238868||2501081||3194637||1238635||3392211 | ||
| + | |- | ||
| + | | style="background:#f0f0f0;"|[[Media: sspace.pdf |'''Misassemblies''']]|||||||||||||| | ||
| + | |- | ||
| + | | # misassemblies||2||9||10||10||10||8||8 | ||
| + | |- | ||
| + | | Misassembled contigs length||215581||3193893||3244631||2705788||3657574||3243566||4050696 | ||
| + | |- | ||
| + | | style="background:#f0f0f0;"| Mismatches|||||||||||||| | ||
| + | |- | ||
| + | | # mismatches per 100 kbp||3.02||7.15||6.2||6.9||7.17||6.05||6.43 | ||
| + | |- | ||
| + | | # indels per 100 kbp||0.46||1.06||1||1.32||1.27||0.95||1.06 | ||
| + | |- | ||
| + | | # N's per 100 kbp||0||97.89||67.67||77.33||77.37||91.03||123.88 | ||
| + | |- | ||
| + | | style="background:#f0f0f0;"| Genome statistics|||||||||||||| | ||
| + | |- | ||
| + | | Genome fraction (%)||98.451||99.498||99.483||99.664||99.748||99.432||99.587 | ||
| + | |- | ||
| + | | Duplication ratio||1.001||1.002||1.002||1.002||1.002||1.003||1.001 | ||
| + | |- | ||
| + | | # genes||4399 + 32 part||4467 + 14 part||4465 + 13 part||4476 + 11 part||4477 + 11 part||4467 + 11 part||4470 + 13 part | ||
| + | |- | ||
| + | | NGA50||133059||571664||425173||852639||1039467||1039472||1039654 | ||
| + | |- | ||
| + | | align="left" style="background:#f0f0f0;"|''' Running Time '''||2hr 28m||2hr 32m ||2hr 37m||2hr 43m||2hr 47m||3hr 43m||3hr 11m | ||
| + | |- | ||
| + | |} | ||
| + | [[Media: sspace_summary.pdf | '''Misassemblies''']] for Adobe reader. | ||