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+ | We used different numbers of SMRT cells from [[Data|Dataset 5]] and [[Pacbio Data|Dataset 9]] to do assembly with all and randomly selected 76X coverage [[Data|Dataset 4]] short reads by SPAdes. | ||
+ | We arbitrary chose 1-4 SMRT cells:<br> | ||
+ | One single SMRT cell: m120208_071634<br> | ||
+ | Two SMRT cells: m120228_210845 + m120208_122534<br> | ||
+ | Three SMRT cells: m120228_115504 + m120228_152936 + m120228_100807<br> | ||
+ | Four SMRT cells: m120228_171636 + m120228_223624 + m120228_100807 + m120228_190630 <br> | ||
We have evaluated the assemblies with [http://bioinf.spbau.ru/en/quast QUAST 2.3](reference genome [ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655_uid57779/ NC_000913] and [[Media: Ec_gene_result.ncbi | Ec_gene_list]]). [more detail] | We have evaluated the assemblies with [http://bioinf.spbau.ru/en/quast QUAST 2.3](reference genome [ftp://ftp.ncbi.nih.gov/genomes/Bacteria/Escherichia_coli_K_12_substr__MG1655_uid57779/ NC_000913] and [[Media: Ec_gene_result.ncbi | Ec_gene_list]]). [more detail] | ||
{| {{table}} border="1" | {| {{table}} border="1" |