The Illumina sequencing data were available at ALLPATHS-LG website, Please refer to Finished bacterial genomes from shotgun sequence data. Genome Research 2012 for detail.

E. coli

Website data

We downloaded Illumina data and pacbio data from ALLPATHS-LG website

fragment library

Reads length : 101bp
Reads amount : 1186190 X2
Insert size : 180bp
Coverage : 46.02X

Raw data

We downloaded the raw data of website data from Sequence Read Archive (SRA)

fragment library

Accession : SRX131033 Reads length : 101bp
Reads amount : 1186190 X2
Insert size : 180bp
Coverage : 46.02X SRX117481 SRX145082

Self-fraction data

PrepareAllPathsInputs.pl\
DATA_DIR=$PWD/test.genome/data\
PLOIDY=1\
FRAG_FRAC=0.088\
IN_GROUPS_CSV=in_groups.csv\
IN_LIBS_CSV=in_libs.csv\
OVERWRITE=True\
| tee prepare.out 

100X

R. sphaeroides

Rhodobacter sphaeroides strain 2.4.1. The R. sphaeroides 2.4.1 consists of two circular chromosomes of 3,188,609 bp and 943,016 bp, and five plasmids of 114,045 bp, 114,178 bp, 105,284 bp, 100,828 bp and 37,100 bp in length, respectively.

S. pneumoniae

Streptococcus pneumoniae TIGR4. The S. pneumoniae TIGR4 consists of a circular chromosome of 2,160,842 bp in length.