HGAP

Revision as of 9 October 2013 00:55 by admin (Comments | Contribs)

Hierarchical Genome Assembly Process (HGAP) was proposed in the ref (Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data. Nat Meth 2013).

Contents

DataSet1

There are total eight SMRT cells, we used all SMRT cells and randomly selected four and six SMRT cells three times for each.

Randomly Selected Four SMRT cells

First

Random Get @m121024_100442_42178_c100389662550000001523034410251205_s1_p0
Random Get @m121024_122509_42178_c100389662550000001523034410251206_s1_p0
Random Get @m121023_202553_42178_c100389662550000001523034410251200_s1_p0
Random Get @m121024_010654_42178_c100389662550000001523034410251202_s1_p0

DataSet2

Random Get @m121024_122509_42178_c100389662550000001523034410251206_s1_p0 Random Get @m121023_202553_42178_c100389662550000001523034410251200_s1_p0 Random Get @m121024_032737_42178_c100389662550000001523034410251203_s1_p0 Random Get @m121024_144608_42178_c100389662550000001523034410251207_s1_p0

DataSet3

Random Get @m121024_032737_42178_c100389662550000001523034410251203_s1_p0 Random Get @m121024_010654_42178_c100389662550000001523034410251202_s1_p0 Random Get @m121023_224605_42178_c100389662550000001523034410251201_s1_p0 Random Get @m121024_074656_42178_c100389662550000001523034410251204_s1_p0


Random_Get_Six

DataSet1

Random Get @m121024_100442_42178_c100389662550000001523034410251205_s1_p0 Random Get @m121023_224605_42178_c100389662550000001523034410251201_s1_p0 Random Get @m121023_202553_42178_c100389662550000001523034410251200_s1_p0 Random Get @m121024_032737_42178_c100389662550000001523034410251203_s1_p0 Random Get @m121024_074656_42178_c100389662550000001523034410251204_s1_p0 Random Get @m121024_144608_42178_c100389662550000001523034410251207_s1_p0

DataSet2

Random Get @m121024_074656_42178_c100389662550000001523034410251204_s1_p0 Random Get @m121023_224605_42178_c100389662550000001523034410251201_s1_p0 Random Get @m121024_032737_42178_c100389662550000001523034410251203_s1_p0 Random Get @m121024_144608_42178_c100389662550000001523034410251207_s1_p0 Random Get @m121024_010654_42178_c100389662550000001523034410251202_s1_p0 Random Get @m121024_100442_42178_c100389662550000001523034410251205_s1_p0

DataSet3

Random Get @m121023_224605_42178_c100389662550000001523034410251201_s1_p0 Random Get @m121023_202553_42178_c100389662550000001523034410251200_s1_p0 Random Get @m121024_032737_42178_c100389662550000001523034410251203_s1_p0 Random Get @m121024_122509_42178_c100389662550000001523034410251206_s1_p0 Random Get @m121024_010654_42178_c100389662550000001523034410251202_s1_p0 Random Get @m121024_144608_42178_c100389662550000001523034410251207_s1_p0





Discard Unconvincing Contigs

Discard Lower-case bases

DataSet2

Discard Contigs

Discard Lower-case bases

DataSet3

Discard Contigs

Discard Lower-case bases