SPAde
- Evaluated by QUAST
- QUAST (QUAST v2.3)
- Running QUAST requires Ec_gene_list and NC_000913.fna. There are 4497 genes in total.
- Score with QUAST: With PacBio Long Reads more detail
| Basic statistics | Website data | Raw Data
|
| # contigs | 1 | 14 |
| Largest contig | 4638970 | 4625005 |
| Total length | 4638970 | 4652215 |
| N50 | 4638970 | 4625005 |
| Misassemblies | ||
| # misassemblies | 1 | 5 |
| Misassembled contigs length | 4638970 | 4625005 |
| Mismatches | ||
| # mismatches per 100kbp | 0.11 | 1.06 |
| # indels per 100kbp | 0.09 | 0.61 |
| # N's per 100kbp | 0 | 282.94 |
| Genome statistics | ||
| Genome fraction (%) | 99.983 | 99.418 |
| Duplication ratio | 1 | 1.013 |
| # genes | 4494 + 1 part | 4471 + 2 part t |
| NGA50 | 4638970 | 2714032 |
| Running Time | 42m | 2hr 35m |
Misassemblies for Adobe reader.
- Score with QUAST: Without PacBio Long Reads more detail
| Basic statistics | Website data | Raw Data | Fractional Data | 50X coverage | 100X coverage |
| # contigs | 2 | 1 | 5 | 3 | 2 |
| Largest contig | 4631220 | 4633080 | 4575759 | 4629108 | 4638312 |
| Total length | 4633146 | 4633080 | 4698903 | 4633082 | 4640072 |
| N50 | 4631220 | 4633080 | 4575759 | 4629108 | 4638312 |
| Misassemblies | |||||
| # misassemblies | 3 | 7 | 8 | 8 | 5 |
| Misassembled contigs length | 4631220 | 4633080 | 4577746 | 4631095 | 4638312 |
| Mismatches | |||||
| # mismatches per 100kbp | 1.19 | 1.42 | 2.84 | 2.52 | 2.26 |
| # indels per 100kbp | 1.13 | 0.83 | 3.26 | 1.24 | 1.85 |
| # N's per 100kbp | 533.22 | 1545.02 | 698.87 | 703.96 | 760.38 |
| Genome statistics | |||||
| Genome fraction (%) | 99.345 | 98.343 | 99.265 | 99.136 | 99.272 |
| Duplication ratio | 1.012 | 1.016 | 1.021 | 1.008 | 1.008 |
| # genes | 4465 + 11 part | 4395 + 31 part | 4460 + 14 part | 4451 + 13 part | 4455 + 14 part |
| NGA50 | 3180483 | 687701 | 654008 | 2675325 | 694154 |
| Running Time | 28m | 2hr 01m | 31m | 28m | 32m |
Misassemblies for Adobe reader.