Basic statistics | Website Data | Raw Data | |
# contigs | 11 | 13 | |
Largest contig | 3188818 | 3188540 | |
Total length | 4601792 | 4588701 | |
N50 | 3188818 | 3188540 | 3188847 |
Misassemblies | |||
# misassemblies | 16 | 12 | |
Misassembled contigs length | 4370092 | 4361060 | |
Mismatches | |||
# mismatches per 100kbp | 3.48 | 3.77 | |
# indels per 100kbp | 3.52 | 5.13| | |
# N's per 100kbp | 0 | 0.09 | |
Genome statistics | |||
Genome fraction (%) | 99.932 | 99.683| | |
Duplication ratio | 1.011 | 1.005 | |
# genes | 4381 + 6 part | 4369 + 10 part | |
NGA50 | 904505 | 2938269 | |
Running Time | 2hr12m | 5hr 09m |
Misassemblies for Adobe reader.
Basic statistics | Website Data | Raw Data | |||
# contigs | 31 | 57 | |||
Largest contig | 3188995 | 3186675 | |||
Total length | 4592561 | 4583750 | |||
N50 | 3188995 | 3186675 | |||
Misassemblies | |||||
# misassemblies | 9 | 6 | |||
Misassembled contigs length | 4205887 | 4147900 | |||
Mismatches | |||||
# mismatches per 100kbp | 5.81 | 4.233 | |||
# indels per 100kbp | 5.64 | 3.57 | |||
# N's per 100kbp | 120.74 | 149.31 | |||
Genome statistics | |||||
Genome fraction (%) | 99.45 | 98.789 | |||
Duplication ratio | 1.018 | 1.022 | |||
# genes | 4348 + 27 part | 4313 + 47 part | |||
NGA50 | 3182258 | 3180491 | |||
Running Time | 41m | 1hr 01m | 36m | 19m | 33m |
Misassemblies for Adobe reader.