SPAdes - D3
Evaluation
- Benchmark genome
- Evaluated by QUAST
- QUAST (QUAST v2.3)
- Running QUAST needs gene list and NC_003028.fna information. There are 2301 genes in total.
- Score with QUAST: With PacBio Long Reads more detail
| Basic statistics | Website Data | Raw Data |
| # contigs | 1 | 5 |
| Largest contig | 2162245 | 1340620 |
| Total length | 2162245 | 2140045 |
| N50 | 2162245 | 1340620 |
| Misassemblies | ||
| # misassemblies | 4 | 1 |
| Misassembled contigs length | 2162245 | 1340620 |
| Mismatches | ||
| # mismatches per 100kbp | 5.7 | 2.15 |
| # indels per 100kbp | 3.52 | 1.08 |
| # N's per 100kbp | 0.05 | 0.14 |
| Genome statistics | ||
| Genome fraction (%) | 99.946 | 99.967 |
| Duplication ratio | 1.011 | 1.005 |
| # genes | 2297 + 4 part | 2299 + 2 part |
| NGA50 | 1198037 | 1338442 |
| Running Time | 1hr16m | 6hr 05m |
Misassemblies for Adobe reader.
- Score with QUAST: Without PacBio Long Reads [more detail]
| Basic statistics | Website Data | Raw Data |
| # contigs | 4 | 6 |
| Largest contig | 1663585 | 2135901 |
| Total length | 2161502 | 2144412 |
| N50 | 1663585 | 2135901 |
| Misassemblies | ||
| # misassemblies | 5 | 19 |
| Misassembled contigs length | 1663585 | 2138844 |
| Mismatches | ||
| # mismatches per 100kbp | 2.62 | 4.9 |
| # indels per 100kbp | 1.5 | 17.33 |
| # N's per 100kbp | 759.8 | 1714.74 |
| Genome statistics | ||
| Genome fraction (%) | 98.798 | 97.204 |
| Duplication ratio | 1.022 | 1.019 |
| # genes | 2271 + 15 part | 2239 + 33 part |
| NGA50 | 403409 | 224016 |
| Running Time | 19m | 53m |
Misassemblies for Adobe reader.