We used Dataset 2, Rhodobacter sphaeroides strain 2.4.1.
Basic statistics | Website Data | Raw Data |
# contigs | 11 | 13 |
Largest contig | 3188818 | 3188540 |
Total length | 4601792 | 4588701 |
N50 | 3188818 | 3188540 |
Misassemblies | ||
# misassemblies | 16 | 12 |
Misassembled contigs length | 4370092 | 4361060 |
Mismatches | ||
# mismatches per 100kbp | 3.48 | 3.77 |
# indels per 100kbp | 3.52 | 5.13| |
# N's per 100kbp | 0 | 0.09 |
Genome statistics | ||
Genome fraction (%) | 99.932 | 99.683| |
Duplication ratio | 1.011 | 1.005 |
# genes | 4381 + 6 part | 4369 + 10 part |
NGA50 | 904505 | 2938269 |
Running Time | 2hr12m | 5hr 09m |
Misassemblies for Adobe reader.
Basic statistics | Website Data | Raw Data |
# contigs | 31 | 57 |
Largest contig | 3188995 | 3186675 |
Total length | 4592561 | 4583750 |
N50 | 3188995 | 3186675 |
Misassemblies | ||
# misassemblies | 9 | 6 |
Misassembled contigs length | 4205887 | 4147900 |
Mismatches | ||
# mismatches per 100kbp | 5.81 | 4.233 |
# indels per 100kbp | 5.64 | 3.57 |
# N's per 100kbp | 120.74 | 149.31 |
Genome statistics | ||
Genome fraction (%) | 99.45 | 98.789 |
Duplication ratio | 1.018 | 1.022 |
# genes | 4348 + 27 part | 4313 + 47 part |
NGA50 | 3182258 | 3180491 |
Running Time | 41m | 1hr 01m |
Misassemblies for Adobe reader.