We used Dataset 3, Streptococcus pneumoniae TIGR4
Basic statistics | Website Data | Raw Data |
# contigs | 1 | 5 |
Largest contig | 2162245 | 1340620 |
Total length | 2162245 | 2140045 |
N50 | 2162245 | 1340620 |
Misassemblies | ||
# misassemblies | 4 | 1 |
Misassembled contigs length | 2162245 | 1340620 |
Mismatches | ||
# mismatches per 100kbp | 5.7 | 2.15 |
# indels per 100kbp | 3.52 | 1.08 |
# N's per 100kbp | 0.05 | 0.14 |
Genome statistics | ||
Genome fraction (%) | 99.946 | 99.967 |
Duplication ratio | 1.011 | 1.005 |
# genes | 2297 + 4 part | 2299 + 2 part |
NGA50 | 1198037 | 1338442 |
Running Time | 1hr16m | 6hr 05m |
Misassemblies for Adobe reader.
Basic statistics | Website Data | Raw Data |
# contigs | 4 | 6 |
Largest contig | 1663585 | 2135901 |
Total length | 2161502 | 2144412 |
N50 | 1663585 | 2135901 |
Misassemblies | ||
# misassemblies | 5 | 19 |
Misassembled contigs length | 1663585 | 2138844 |
Mismatches | ||
# mismatches per 100kbp | 2.62 | 4.9 |
# indels per 100kbp | 1.5 | 17.33 |
# N's per 100kbp | 759.8 | 1714.74 |
Genome statistics | ||
Genome fraction (%) | 98.798 | 97.204 |
Duplication ratio | 1.022 | 1.019 |
# genes | 2271 + 15 part | 2239 + 33 part |
NGA50 | 403409 | 224016 |
Running Time | 19m | 53m |
Misassemblies for Adobe reader.