We used Dataset 2, Rhodobacter sphaeroides strain 2.4.1.
spades.py --pe1-1 frag_1.fastq --pe1-2 frag_2.fastq --mp1-1 jump_1.fastq --mp1-2 jump_2.fastq
Basic statistics | Website Data | Raw Data |
# contigs | 57 | 44 |
Largest contig | 1209840 | 1895290 |
Total length | 4566203 | 4584163 |
N50 | 318530 | 422736 |
Misassemblies | ||
# misassemblies | 33 | 10 |
Misassembled contigs length | 3312932 | 1235058 |
Mismatches | ||
# mismatches per 100kbp | 53.46 | 37.73 |
# indels per 100kbp | 23.18 | 8.02 |
# N's per 100kbp | 203.41 | 79.88 |
Genome statistics | ||
Genome fraction (%) | 98.589 | 99.157 |
Duplication ratio | 1.006 | 1.005 |
# genes | 4170 + 166 part | 4287 + 68 part |
NGA50 | 164917 | 331154 |
Running Time | 27m | 1hr 39m |
Misassemblies for Adobe reader.
Basic statistics | Website Data | Raw Data |
# contigs | 31 | 57 |
Largest contig | 3188995 | 3186675 |
Total length | 4592561 | 4583750 |
N50 | 3188995 | 3186675 |
Misassemblies | ||
# misassemblies | 9 | 6 |
Misassembled contigs length | 4205887 | 4147900 |
Mismatches | ||
# mismatches per 100kbp | 5.81 | 4.233 |
# indels per 100kbp | 5.64 | 3.57 |
# N's per 100kbp | 120.74 | 149.31 |
Genome statistics | ||
Genome fraction (%) | 99.45 | 98.789 |
Duplication ratio | 1.018 | 1.022 |
# genes | 4348 + 27 part | 4313 + 47 part |
NGA50 | 3182258 | 3180491 |
Running Time | 1hr 19m | 1d 15hr 44m |
Misassemblies for Adobe reader.