Wgs-8.2
TEST
We have evaluated the assemblies with QUAST 2.3(reference genome NC_000913 and Ec_gene_list). [more detail]
| Statistics without reference | PBcR_1cell | PBcR_2cell | PBcR_3cell | PBcR_4cell | PBcR_17cell |
| # contigs | 24 | 9 | 6 | 2 | 3 |
| Largest contig | 699206 | 2229824 | 3385118 | 4461262 | 4649343 |
| Total length | 4686657 | 4685972 | 4678733 | 4653153 | 4674706 |
| N50 | 564692 | 981448 | 3385118 | 4461262 | 4649343 |
| Misassemblies | |||||
| # misassemblies | 57 | 11 | 10 | 9 | 11 |
| Misassembled contigs length | 1091536 | 3501620 | 4397319 | 4461262 | 4661093 |
| Mismatches | |||||
| # mismatches per 100 kbp | 2.26 | 1.64 | 0.91 | 2.07 | 2 |
| # indels per 100 kbp | 0.63 | 0.32 | 0.24 | 0.3 | 0.47 |
| # N's per 100 kbp | 0 | 0 | 0 | 0 | 0 |
| Genome statistics | |||||
| Genome fraction (%) | |99.922 | 100 | 100 | 100 | 100 |
| Duplication ratio | 1.011 | 1.01 | 1.008 | 1.003 | 1.008 |
| # genes | 4482 + 13 part | 4495 + 2 part | 4495 + 2 part | 4494 + 3 part | 4495 + 2 part |
| NGA50 | 293226 | 947955 | 949288 | 3026415 | 3026412 |
| Running Time | 6hr 8m | 9hr 52m | 10hr 24m | 11hr 57m | 12hr 52m |
Misassemblies for Adobe reader.