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(Datasets employed in this study)
(Datasets employed in this study)
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  <sup>a</sup> Long reads were downloaded from ftp://ftp.broadinstitute.org/pub/papers/assembly/Ribeiro2012/data    <sup>a</sup> Long reads were downloaded from ftp://ftp.broadinstitute.org/pub/papers/assembly/Ribeiro2012/data 
       
- b Paired reads were provided in http://www.illumina.com/systems/miseq/scientific_data.ilmn   + <sup>b</sup> Paired reads were provided in http://www.illumina.com/systems/miseq/scientific_data.ilmn  
       
- c PacBio HDF5 files were requested from NCBI Sequence Read Archive (SRA).   + <sup>c</sup> PacBio HDF5 files were requested from NCBI Sequence Read Archive (SRA).  
       
- d PacBio HDF5 files were downloaded from http://files.pacb.com/software/hgap/index.html   + <sup>d</sup> PacBio HDF5 files were downloaded from http://files.pacb.com/software/hgap/index.html  
       
- e PacBio HDF5 files were downloaded from https://github.com/PacificBiosciences/DevNet/wiki/E.-coli-20kb-Size-Selected-Library-with-P4-C2   + <sup>e</sup> PacBio HDF5 files were downloaded from https://github.com/PacificBiosciences/DevNet/wiki/E.-coli-20kb-Size-Selected-Library-with-P4-C2