(→Datasets employed in this study)
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(→Datasets employed in this study)
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We have used <span style="color:#FF0000;background-color:#ffffcc;">ALLPATHS-LG</span> to assemble three bacterial genomes: [[E. coli]], [[R. sphaeroides]], and [[S. pneumoniae]]. The sequencing reads for these three genome assemblies are summarized in the following table (<span style="color:#FF0000;background-color:#ffffcc;">D1-D3</span>). | We have used <span style="color:#FF0000;background-color:#ffffcc;">ALLPATHS-LG</span> to assemble three bacterial genomes: [[E. coli]], [[R. sphaeroides]], and [[S. pneumoniae]]. The sequencing reads for these three genome assemblies are summarized in the following table (<span style="color:#FF0000;background-color:#ffffcc;">D1-D3</span>). | ||
+ | We have conduct a hybrid approach proposed by Koren et al.[] to correct long reads with short reads ([pacBioToCA http://]), then to de novo assemble the corrected long reads ([runCA]). | ||
{| {{table}} border="1" | {| {{table}} border="1" |