Version Differences for Home
|
(→Datasets employed in this study)
|
(→Datasets employed in this study)
|
| Line 62: | |||
| <sup>e</sup> PacBio HDF5 files were downloaded from https://github.com/PacificBiosciences/DevNet/wiki/E.-coli-20kb-Size-Selected-Library-with-P4-C2<br> | <sup>e</sup> PacBio HDF5 files were downloaded from https://github.com/PacificBiosciences/DevNet/wiki/E.-coli-20kb-Size-Selected-Library-with-P4-C2<br> | ||
| + | =Workflow= | ||
| - | [[File:Figure_1.png]] | + | [[File:Figure_1.png]] <br> |
| Comparisons of the assemblers conducted in this study. SSPACE-LongRead is a scaffolder using single molecule long reads to upgrade pre-assembled contigs constructed from short reads. ALLPATHS-LG and SPAdes are hybrid assemblers which take short reads and long reads as inputs. PBcR pipeline uses short reads to correct long reads by pacBioToCA, and then assembles corrected long reads (PBcR) by Celera assembler (runCA). Hierarchical genome-assembly process (HGAP) and PBcR pipeline via self-correction (PBcR pipeline(S)) take long reads as input to produce non-hybrid assembly. | Comparisons of the assemblers conducted in this study. SSPACE-LongRead is a scaffolder using single molecule long reads to upgrade pre-assembled contigs constructed from short reads. ALLPATHS-LG and SPAdes are hybrid assemblers which take short reads and long reads as inputs. PBcR pipeline uses short reads to correct long reads by pacBioToCA, and then assembles corrected long reads (PBcR) by Celera assembler (runCA). Hierarchical genome-assembly process (HGAP) and PBcR pipeline via self-correction (PBcR pipeline(S)) take long reads as input to produce non-hybrid assembly. | ||