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ALLPATHS-LG
E. coli
R. sphaeroides
S. pneumoniae
PBcR pipeline
Data
Read Depths
pacBioToCA
runCA
wgs-8.2
SPAdes
E. coli
R. sphaeroides
S. pneumoniae
Hybrid
SSPACE-longread
Result
Non-hybrid assembly
Pacbio Data
HGAP
PBcR pipeline
wgs-8.2
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Changes as of 6 July 2025 14:32. (
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13 January 2015
(
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Wgs-8.2
. . (+75) . .
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(
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) 20:06
HGAP
. . (-10) . .
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Postprocess by discarding lower-case bases
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(
diff
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) 20:04
HGAP
. . (-26) . .
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Postprocess by discarding lower-case bases
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(
diff
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) 20:02
HGAP
. . (+28) . .
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Postprocess by discarding lower-case bases
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(
diff
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) 20:01
HGAP
. . (-27) . .
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Postprocess by discarding lower-case bases
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(
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HGAP
. . (+1) . .
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Postprocess by discarding lower-case bases
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(
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) 19:44
HGAP
. . (+7) . .
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Postprocess by discarding lower-case bases
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(
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) 19:41
PBcR
. . (+1) . .
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→
higher coverage bias
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7 January 2015
(
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) 03:50
SPAdes - hybrid
. . (+66) . .
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Evaluation
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(
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) 02:08
PBcR
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Dataset 9 (E. coli K-12, P4-C2 chemistry, 20 Kbp, 1 SMRT cell)
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