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ALLPATHS-LG
E. coli
R. sphaeroides
S. pneumoniae
PBcR pipeline
Data
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pacBioToCA
runCA
wgs-8.2
SPAdes
E. coli
R. sphaeroides
S. pneumoniae
Hybrid
SSPACE-longread
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Non-hybrid assembly
Pacbio Data
HGAP
PBcR pipeline
wgs-8.2
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18 March 2014
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R. sphaeroides
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17 March 2014
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E. coli
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SCA
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15 March 2014
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R. sphaeroides
. . (+1) . .
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R. sphaeroides
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Dataset 7, (M. ruber DSM1279, 4 SMRT cells)
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Dataset 8 (P. heparinus DSM2366, 7 SMRT cells)
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Dataset 7 (M. ruber DSM1279, 4 SMRT cells)
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Dataset 9 (E. coli K-12, P4-C2 chemistry, 20 Kbp, 1 SMRT cell)
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HGAP
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Dataset 8 (P. heparinus DSM2366, 7 SMRT cells)
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HGAP
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Dataset 6 (E. coli K-12 MG1655, 8 SMRT cells)
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HGAP
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Dataset 5 (E. coli K-12 MG1655, 17 SMRT cells)
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HGAP
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Dataset 5 (E. coli K-12 MG1655, 17 SMRT cells)
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SCA
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Dataset 9 (E. coli K-12, P4-C2 chemistry, 20 Kbp, 1 SMRT cell)
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SCA
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(
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HGAP
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Postprocess by discarding lower-case bases
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HGAP
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(
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(
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S. pneumoniae
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R. sphaeroides
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E. coli
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14 March 2014
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S. pneumoniae
. . (-1) . .
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100X coverage reads
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S. pneumoniae
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50X coverage reads
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S. pneumoniae
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